Commits · dev · pangepop / MSpangepop

View open merge request

Dec 03, 2024
- Merge branch 'dev_lpiat' into 'dev' · d6a4785c
  PIAT LUCIEN authored 3 months ago
  
  Small modifications See merge request !12
  d6a4785c
- Small modifications · e6a9d512
  PIAT LUCIEN authored 3 months ago
  
  e6a9d512
Nov 29, 2024
- Merge branch 'dev_lpiat' into 'dev' · e5d23c0c
  Ludovic Duvaux authored 3 months ago
  
  Dev lpiat See merge request !11
  e5d23c0c
- update readme · 7db26917
  PIAT LUCIEN authored 3 months ago
  
  7db26917
- Update the naing convention for the wf · 2fe6a81f
  PIAT LUCIEN authored 3 months ago
  
  2fe6a81f
- update readme · fb3f7c04
  PIAT LUCIEN authored 3 months ago
  
  fb3f7c04
- remove typo · e7fb06ab
  PIAT LUCIEN authored 3 months ago
  
  e7fb06ab
- Update readme for new slurm integration · 3791f30a
  PIAT LUCIEN authored 3 months ago
  
  3791f30a
- Lot of changes, add support resources and add configurable paths · d743c528
  PIAT LUCIEN authored 3 months ago
  
  d743c528
- implement slurm executor plugin · 3b33ced6
  PIAT LUCIEN authored 3 months ago
  
  3b33ced6
- remove obsolete config · e8cbdc61
  PIAT LUCIEN authored 3 months ago
  
  e8cbdc61
- update to track new config · b1d26e1f
  PIAT LUCIEN authored 3 months ago
  
  b1d26e1f
- move file so it is not hidden · f7f2972a
  PIAT LUCIEN authored 3 months ago
  
  f7f2972a
Nov 20, 2024
- Fixes #35 : Compress output fasta before ending the script · 31f3ecbd
  PIAT LUCIEN authored 3 months ago
  
  31f3ecbd
- Fixes #34 : Remove reference sequence form the output · 6715935d
  PIAT LUCIEN authored 3 months ago
  
  6715935d
- Add a script to remove the ref from the output #34 · 376d8c2b
  PIAT LUCIEN authored 3 months ago
  
  376d8c2b
Nov 19, 2024
- Add new containers for the job · e6281995
  PIAT LUCIEN authored 3 months ago
  
  e6281995
- Fixes #31 : Rename file, add usecase in the helper function · 6a000728
  PIAT LUCIEN authored 3 months ago
  
  6a000728
- Fixes #32 : Add doc and help split_path.sh · b2ca0e46
  PIAT LUCIEN authored 3 months ago
  
  b2ca0e46
Nov 04, 2024
- add small script to split the fasta file · 097404da
  PIAT LUCIEN authored 4 months ago
  
  097404da
- Fixes #29, add job file for CBIB HPC · b11d56a4
  PIAT LUCIEN authored 4 months ago
  
  b11d56a4
Oct 31, 2024
- revert changes · 90ac0130
  PIAT LUCIEN authored 4 months ago
  
  90ac0130
- Relocate readme info · 7d9f9179
  PIAT LUCIEN authored 4 months ago
  
  7d9f9179
- Remove my email · 82e562a4
  PIAT LUCIEN authored 4 months ago
  
  82e562a4
- Update readme · a1f2bffb
  PIAT LUCIEN authored 4 months ago
  
  a1f2bffb
- Work on #26 · e99c23bd
  PIAT LUCIEN authored 4 months ago
  
  e99c23bd
- Revised ULM · 09c194dc
  PIAT LUCIEN authored 4 months ago
  
  09c194dc
Oct 30, 2024
- add more ram · 60a5f806
  PIAT LUCIEN authored 4 months ago
  
  60a5f806
- better clarity · 59a5848e
  PIAT LUCIEN authored 4 months ago
  
  59a5848e
- change variable name · 20929bdc
  PIAT LUCIEN authored 4 months ago
  
  20929bdc
- add more documentation · 91443da8
  PIAT LUCIEN authored 4 months ago
  
  91443da8
- add correct reco rate · 996648d9
  PIAT LUCIEN authored 4 months ago
  
  996648d9
- Fixes #28 #25 #17 #16 and #15 : Redo the variant generation script with better... · 53df06fe
  PIAT LUCIEN authored 4 months ago
  
  Fixes #28 #25 #17 #16 and #15 : Redo the variant generation script with better logic, I/O and clarity
  53df06fe
- Add a suite for I operations · d0837471
  PIAT LUCIEN authored 4 months ago
  
  d0837471
- add a variant class and its method · 6b3053a3
  PIAT LUCIEN authored 4 months ago
  
  6b3053a3
- relocate files · f527e383
  PIAT LUCIEN authored 4 months ago
  
  f527e383
Oct 29, 2024
- Add warning for issues #25 #26 #27 · 1693584f
  PIAT LUCIEN authored 4 months ago
  
  1693584f
- Fixes #24 : Create SLURM config for all rules · 6449b944
  PIAT LUCIEN authored 4 months ago
  
  6449b944
- Add small QOL · 679f4320
  PIAT LUCIEN authored 4 months ago
  
  679f4320
Oct 28, 2024
- update for better cluster experience · 0d2482a4
  PIAT LUCIEN authored 4 months ago
  
  0d2482a4