[NGL-Bi] Deals with readsets in case of resume pipeline
should we remove them ? Keep them ?
How to get the data base as clean as possible
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- Jules Sabban changed milestone to %Next from V1.20.0
changed milestone to %Next from V1.20.0
- Jules Sabban added NGL-Bi New Feature labels
added NGL-Bi New Feature labels
- Jules Sabban assigned to @jsabban
assigned to @jsabban
- Author Maintainer
suppress old readsets if :
If createNGL-Bi_Readsset is not cached and workflow.resume == true Collapse replies - Author Maintainer
Not a safe idea...
Do this instead :
- modify createNGL-Bi_ReadSets.pl :
- if sample has already associated RS, put its code in a file nammed
ReadsetsNGL-Bi.existing
- if sample has already associated RS, put its code in a file nammed
- Run
REMOVE_READSETS
process with this file as input
Edited by Jules Sabban - modify createNGL-Bi_ReadSets.pl :
- Author Maintainer
Automation of removing documents in database is not safe !
ThecreateNGL-Bi_ReadSets.pl
script will produce a list of old readsets, but nextflow will only exports this file. If removing of readsets in this file is needed we will run removeNGL-BiReadsets.pl manualy using theReadsetsNGL-Bi.existing
file.Edited by Jules Sabban
- Jules Sabban mentioned in commit 0dbf55a9
mentioned in commit 0dbf55a9
- Jules Sabban closed
closed
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