[NGL-Bi] Deals with readsets in case of resume pipeline

should we remove them ? Keep them ?

How to get the data base as clean as possible

changed milestone to %Next from V1.20.0

added NGL-Bi New Feature labels

assigned to @jsabban

suppress old readsets if :
If createNGL-Bi_Readsset is not cached and workflow.resume == true

Not a safe idea...

Do this instead :

• modify createNGL-Bi_ReadSets.pl :
  • if sample has already associated RS, put its code in a file nammed ReadsetsNGL-Bi.existing
• Run REMOVE_READSETS process with this file as input

Automation of removing documents in database is not safe !
The createNGL-Bi_ReadSets.pl script will produce a list of old readsets, but nextflow will only exports this file. If removing of readsets in this file is needed we will run removeNGL-BiReadsets.pl manualy using the ReadsetsNGL-Bi.existing file.

mentioned in commit 0dbf55a9

closed