New ressources for AVITI data
- Mangement of fastq, with lane number - Suppress merging lane step - Use lane number and max-depth to determine number of fastq in the lane - Use aviti module Ref: #96
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- modules/local/module_core_element.nf 28 additions, 0 deletionsmodules/local/module_core_element.nf
- nextflow.config 3 additions, 2 deletionsnextflow.config
- sub-workflows/local/core_element.nf 47 additions, 0 deletionssub-workflows/local/core_element.nf
- sub-workflows/local/core_pipeline.nf 1 addition, 19 deletionssub-workflows/local/core_pipeline.nf
- workflow/illumina_qc.nf 28 additions, 14 deletionsworkflow/illumina_qc.nf
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