Singularityfile

Bootstrap: docker
From: continuumio/miniconda3
IncludeCmd: yes

%files
environment.yml /

%post
apt-get update && apt-get install -y procps && apt-get clean -y
/opt/conda/bin/conda env create -n GeT-template-1.0dev -f /environment.yml
/opt/conda/bin/conda clean -a

%environment
export LC_ALL=C
export PATH=/opt/conda/bin:$PATH
. /etc/profile.d/conda.sh
conda activate GeT-template-1.0dev

%runscript
"$@"